If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ), 'gf_id' => 'HOM05D000701', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000701' ), 'data_identifier' => 'HOM05D000701', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000701', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '816', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09700' => 'bna', 'A02p09710' => 'bna', 'A02p09720' => 'bna', 'A03p14090' => 'bna', 'A03p14100' => 'bna', 'A03p14110' => 'bna', 'A03p14120' => 'bna', 'A03p14130' => 'bna', 'A03p14140' => 'bna', 'A03p14930' => 'bna', 'A09p29930' => 'bna', 'A10p12580' => 'bna', 'A10p12680' => 'bna', 'A10p12690' => 'bna', 'A10p12700' => 'bna', 'Aa31LG10G17310' => 'aar', 'Aa31LG2G16600' => 'aar', 'Aa31LG2G16790' => 'aar', 'Aa31LG3G11280' => 'aar', 'Aa31LG3G11290' => 'aar', 'Aa31LG3G11300' => 'aar', 'Aa31LG3G11310' => 'aar', 'Aa31LG3G11320' => 'aar', 'Aa31LG3G11330' => 'aar', 'Aa31LG3G11340' => 'aar', 'Aa31LG3G11350' => 'aar', 'Aa31LG3G11360' => 'aar', 'Aa31LG3G11370' => 'aar', 'Aa31LG3G11380' => 'aar', 'Aa31sc2051G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1932' => 'aag', 'Actinidia00111' => 'ach', 'Actinidia02314' => 'ach', 'Actinidia11882' => 'ach', 'Actinidia11884' => 'ach', 'Ah.06g181760' => 'amhyb', 'Ah.06g181770' => 'amhyb', 'Ah.06g181780' => 'amhyb', 'Ah.14g087660' => 'amhyb', 'AL1G49040' => 'aly', 'AL5G32480' => 'aly', 'AL8G30870' => 'aly', 'AL8G30880' => 'aly', 'AL8G30890' => 'aly', 'AL8G30900' => 'aly', 'AL8G30910' => 'aly', 'AL8G30920' => 'aly', 'AL8G30930' => 'aly', 'Aqoxy1G02564' => 'aox', 'Aqoxy1G02565' => 'aox', 'Aqoxy1G02568' => 'aox', 'Aqoxy1G04068' => 'aox', 'Aqoxy1G04071' => 'aox', 'Aqoxy1G04072' => 'aox', 'Aqoxy1G04073' => 'aox', 'Aqoxy1G04074' => 'aox', 'Aqoxy1G04075' => 'aox', 'Aqoxy1G04076' => 'aox', 'Aqoxy1G04077' => 'aox', 'Aqoxy1G04087' => 'aox', 'Aqoxy2G01267' => 'aox', 'Aqoxy2G01275' => 'aox', 'Aqoxy2G01278' => 'aox', 'Aqoxy4G02503' => 'aox', 'Aqoxy4G02504' => 'aox', 'Aqoxy4G02505' => 'aox', 'Aqoxy6G02923' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1EMS42' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.61HQPG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B30RUE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6Y187' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSZF19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S5G6Y7' => 'arhy', 'AT1G34490' => 'ath', 'AT1G34500' => 'ath', 'AT1G34520' => 'ath', 'AT3G51970' => 'ath', 'AT5G51420' => 'ath', 'AT5G55320' => 'ath', 'AT5G55330' => 'ath', 'AT5G55340' => 'ath', 'AT5G55350' => 'ath', 'AT5G55360' => 'ath', 'AT5G55370' => 'ath', 'AT5G55380' => 'ath', 'ATR0624G079' => 'atr', 'Atru.chr1.2448' => 'acertr', 'Atru.chr1.2456' => 'acertr', 'Atru.chr1.2466' => 'acertr', 'Atru.chr1.3013' => 'acertr', 'Atru.chr11.2545' => 'acertr', 'Atru.chr11.2548' => 'acertr', 'Atru.chr11.2551' => 'acertr', 'Atru.chr2.2488' => 'acertr', 'Atru.chr2.3578' => 'acertr', 'Atru.chr2.3579' => 'acertr', 'Atru.chr2.3580' => 'acertr', 'Atru.chr3.1266' => 'acertr', 'Atru.chr4.1127' => 'acertr', 'Atru.chr4.1189' => 'acertr', 'Atru.chr6.294' => 'acertr', 'Atru.chr6.305' => 'acertr', 'Atru.chr6.313' => 'acertr', 'AUR62012787' => 'cqu', 'AUR62012792' => 'cqu', 'AUR62012794' => 'cqu', 'AUR62015913' => 'cqu', 'AUR62015914' => 'cqu', 'AUR62021860' => 'cqu', 'AUR62021865' => 'cqu', 'AUR62024756' => 'cqu', 'AUR62024757' => 'cqu', 'BcaB01g00395' => 'bca', 'BcaB01g00455' => 'bca', 'BcaB01g00456' => 'bca', 'BcaB01g04345' => 'bca', 'BcaB01g04347' => 'bca', 'BcaB05g22199' => 'bca', 'BcaB05g22202' => 'bca', 'BcaB05g22203' => 'bca', 'BcaB05g22204' => 'bca', 'BcaB05g22205' => 'bca', 'BcaB05g22206' => 'bca', 'BcaB08g35893' => 'bca', 'BcaB08g35894' => 'bca', 'BcaB08g35895' => 'bca', 'BcaB08g35897' => 'bca', 'BcaB08g35898' => 'bca', 'BcaC01g06356' => 'bca', 'BcaC01g06357' => 'bca', 'BcaC01g06359' => 'bca', 'BcaC01g06362' => 'bca', 'BcaC01g06363' => 'bca', 'BcaC01g06367' => 'bca', 'BcaC03g14241' => 'bca', 'BcaC03g14242' => 'bca', 'BcaC03g14243' => 'bca', 'BcaC04g20238' => 'bca', 'BcaC04g20240' => 'bca', 'BcaC04g20241' => 'bca', 'BcaC04g20248' => 'bca', 'BcaC04g20924' => 'bca', 'BcaC07g40812' => 'bca', 'BcaNung03193' => 'bca', 'BcaNung05926' => 'bca', 'BolC2t07722H' => 'bol', 'BolC2t07723H' => 'bol', 'BolC2t07724H' => 'bol', 'BolC2t07725H' => 'bol', 'BolC2t07726H' => 'bol', 'BolC3t14072H' => 'bol', 'BolC3t14073H' => 'bol', 'BolC3t14074H' => 'bol', 'BolC3t14155H' => 'bol', 'BolC8t50342H' => 'bol', 'BolC8t51380H' => 'bol', 'BolC9t56620H' => 'bol', 'BolC9t57460H' => 'bol', 'BolC9t57466H' => 'bol', 'BolC9t57470H' => 'bol', 'BolC9t57471H' => 'bol', 'BolC9t57472H' => 'bol', 'BraA02t06034Z' => 'bra', 'BraA02t06035Z' => 'bra', 'BraA02t06036Z' => 'bra', 'BraA02t06037Z' => 'bra', 'BraA03t10709Z' => 'bra', 'BraA03t10710Z' => 'bra', 'BraA03t10711Z' => 'bra', 'BraA03t10712Z' => 'bra', 'BraA03t10713Z' => 'bra', 'BraA03t10714Z' => 'bra', 'BraA09t38555Z' => 'bra', 'BraA10t43351Z' => 'bra', 'BraA10t43353Z' => 'bra', 'BraA10t43354Z' => 'bra', 'C02p16170' => 'bna', 'C02p16180' => 'bna', 'C02p16190' => 'bna', 'C02p16240' => 'bna', 'C03p16530' => 'bna', 'C03p16550' => 'bna', 'C03p16560' => 'bna', 'C03p17420' => 'bna', 'C07p53090' => 'bna', 'C08p38060' => 'bna', 'C09p37870' => 'bna', 'C09p45660' => 'bna', 'C09p45980' => 'bna', 'C09p46000' => 'bna', 'C09p46010' => 'bna', 'C09p46030' => 'bna', 'CAN.G1152.6' => 'can', 'CAN.G1186.35' => 'can', 'CAN.G1186.36' => 'can', 'CAN.G1186.37' => 'can', 'CAN.G1186.38' => 'can', 'CAN.G1186.39' => 'can', 'CAN.G389.10' => 'can', 'CANSAT11G1543' => 'cansat', 'CANSAT56G2691' => 'cansat', 'CANSAT56G2790' => 'cansat', 'CANSAT56G3941' => 'cansat', 'CANSAT80G0452' => 'cansat', 'CANSAT80G0766' => 'cansat', 'CANSAT80G1852' => 'cansat', 'CANSAT80G2307' => 'cansat', 'CANSAT80G2568' => 'cansat', 'CARHR161600' => 'chi', 'CARHR161610' => 'chi', 'CARHR161620' => 'chi', 'CARHR161630' => 'chi', 'CARHR264140' => 'chi', 'CARHR264150' => 'chi', 'CARHR268680' => 'chi', 'CARHR268690' => 'chi', 'CARHR268700' => 'chi', 'CARHR268710' => 'chi', 'CARHR268720' => 'chi', 'Carub.0005s1832' => 'cru', 'Carub.0008s1195' => 'cru', 'Carub.0008s1197' => 'cru', 'Carub.0008s1566' => 'cru', 'Carub.0008s1567' => 'cru', 'Carub.0008s1568' => 'cru', 'Carub.0008s1569' => 'cru', 'Carub.0008s1570' => 'cru', 'Carub.0008s1571' => 'cru', 'Carub.0008s1572' => 'cru', 'Ca_14773_v3' => 'car', 'Ca_27550_v3' => 'car', 'CBR_g53616' => 'cbr', 'CBR_g53618' => 'cbr', 'Cc00_g13810' => 'ccan', 'Cc05_g14450' => 'ccan', 'Cc05_g14460' => 'ccan', 'Cc07_g08120' => 'ccan', 'Cc09_g00890' => 'ccan', 'CDE04G2498' => 'cde', 'Cfa000106' => 'cfa', 'Cfa020261' => 'cfa', 'Cfa020262' => 'cfa', 'Cfa020263' => 'cfa', 'Ciclev10008717m.g' => 'ccl', 'Ciclev10008789m.g' => 'ccl', 'Ciclev10031885m.g' => 'ccl', 'CiPaw.10G077800' => 'cil', 'CiPaw.11G196200' => 'cil', 'CiPaw.12G134600' => 'cil', 'CiPaw.13G008600' => 'cil', 'CiPaw.14G004200' => 'cil', 'ClCG09G011130' => 'cla', 'ClCG09G011140' => 'cla', 'ClCG09G011150' => 'cla', 'ClCG09G011160' => 'cla', 'ClCG09G020890' => 'cla', 'ClCG10G012090' => 'cla', 'ClCG10G012100' => 'cla', 'ClCG10G012110' => 'cla', 'COL.COLO4_09757' => 'col', 'COL.COLO4_11610' => 'col', 'COL.COLO4_12326' => 'col', 'COL.COLO4_30577' => 'col', 'COL.COLO4_31880' => 'col', 'COL.COLO4_31884' => 'col', 'Cpa.g.sc12.226' => 'cpa', 'Cpa.g.sc12.227' => 'cpa', 'Cpa.g.sc197.28' => 'cpa', 'Cpa.g.sc75.116' => 'cpa', 'Cre02.g098050' => 'cre', 'Cre06.g308700' => 'cre', 'Cre07.g349650' => 'cre', 'Cre07.g349900' => 'cre', 'Cre07.g349966' => 'cre', 'Cre07.g350050' => 'cre', 'Cre12.g548651' => 'cre', 'Cre16.g685300' => 'cre', 'CsaV3_3G031820' => 'csa', 'CsaV3_3G031850' => 'csa', 'CsaV3_3G031860' => 'csa', 'CsaV3_3G031870' => 'csa', 'CsaV3_7G016120' => 'csa', 'CsaV3_7G019890' => 'csa', 'CsaV3_7G019910' => 'csa', 'CsaV3_7G021090' => 'csa', 'CsaV3_7G021110' => 'csa', 'CsaV3_7G021160' => 'csa', 'CSS0002137' => 'camsi', 'CSS0004818' => 'camsi', 'CSS0010113' => 'camsi', 'CSS0017269' => 'camsi', 'CSS0031741' => 'camsi', 'CSS0036175' => 'camsi', 'CSS0038272' => 'camsi', 'CSS0048185' => 'camsi', 'DCAR_004887' => 'dca', 'DCAR_016644' => 'dca', 'DCAR_017101' => 'dca', 'DCAR_027823' => 'dca', 'DCAR_027824' => 'dca', 'Dinv07401' => 'din', 'Dinv13965' => 'din', 'Dinv13966' => 'din', 'Dinv22220' => 'din', 'Dinv40810' => 'din', 'Dinv40812' => 'din', 'Dinv40815' => 'din', 'Duzib138G1750' => 'dzi', 'Duzib213G0524' => 'dzi', 'Duzib213G0556' => 'dzi', 'Duzib235G0402' => 'dzi', 'Duzib268G0195' => 'dzi', 'ECA246G0782' => 'eca', 'ECA246G1574' => 'eca', 'ECA246G3875' => 'eca', 'EL10Ac4g07648' => 'bvu', 'EL10Ac9g23016' => 'bvu', 'Eucgr.D00093' => 'egr', 'Eucgr.D01396' => 'egr', 'Eucgr.D01398' => 'egr', 'Eucgr.D01403' => 'egr', 'Eucgr.D01408' => 'egr', 'Eucgr.D01409' => 'egr', 'Eucgr.D01457' => 'egr', 'Eucgr.E03928' => 'egr', 'Eucgr.E03930' => 'egr', 'Eucgr.E03931' => 'egr', 'Eucgr.E03938' => 'egr', 'Eucgr.F00640' => 'egr', 'Eucgr.F00643' => 'egr', 'Eucgr.F03512' => 'egr', 'Eucgr.I00619' => 'egr', 'Eucgr.L00539' => 'egr', 'Eucgr.L00540' => 'egr', 'Eucgr.L01584' => 'egr', 'Eucgr.L01838' => 'egr', 'FAN01G1520' => 'fan', 'FAN02G3836' => 'fan', 'FAN03G1250' => 'fan', 'FAN05G0218' => 'fan', 'FAN06G0251' => 'fan', 'FAN06G4568' => 'fan', 'FAN09G2444' => 'fan', 'FAN14G2896' => 'fan', 'FAN14G4133' => 'fan', 'FAN16G0669' => 'fan', 'FAN19G2138' => 'fan', 'FAN23G2306' => 'fan', 'FAN24G1480' => 'fan', 'FAN25G0702' => 'fan', 'FAN25G3243' => 'fan', 'FAN26G3459' => 'fan', 'FAN27G1429' => 'fan', 'FAN28G1110' => 'fan', 'FAN28G1750' => 'fan', 'FvH4_1g25220' => 'fve', 'FvH4_1g26010' => 'fve', 'FvH4_2g09840' => 'fve', 'FvH4_2g09880' => 'fve', 'FvH4_3g00990' => 'fve', 'FvH4_3g00991' => 'fve', 'FvH4_3g01000' => 'fve', 'FvH4_6g44520' => 'fve', 'FvH4_7g01920' => 'fve', 'Glyma.02G296000' => 'gma', 'Glyma.08G323100' => 'gma', 'Glyma.08G323400' => 'gma', 'Glyma.08G323600' => 'gma', 'Glyma.09G010200' => 'gma', 'Glyma.09G226200' => 'gma', 'Glyma.15G114700' => 'gma', 'Glyma.18G086700' => 'gma', 'Glyma.18G087200' => 'gma', 'Glyma.18G087500' => 'gma', 'Glyma.18G088800' => 'gma', 'Glyma.18G089000' => 'gma', 'Gohir.A01G085250' => 'ghi', 'Gohir.A04G010700' => 'ghi', 'Gohir.A04G010900' => 'ghi', 'Gohir.A04G011000' => 'ghi', 'Gohir.A04G011066' => 'ghi', 'Gohir.A06G153160' => 'ghi', 'Gohir.A08G055700' => 'ghi', 'Gohir.A13G135700' => 'ghi', 'Gohir.D01G071600' => 'ghi', 'Gohir.D05G377066' => 'ghi', 'Gohir.D05G377132' => 'ghi', 'Gohir.D05G377200' => 'ghi', 'Gohir.D05G377300' => 'ghi', 'Gohir.D06G159800' => 'ghi', 'Gohir.D08G065000' => 'ghi', 'Gohir.D13G140100' => 'ghi', 'Gorai.002G094400' => 'gra', 'Gorai.004G067300' => 'gra', 'Gorai.009G444800' => 'gra', 'Gorai.009G444900' => 'gra', 'Gorai.009G445000' => 'gra', 'Gorai.009G445100' => 'gra', 'Gorai.010G186500' => 'gra', 'Gorai.013G156700' => 'gra', 'GSVIVG01006103001' => 'vvi', 'GSVIVG01037746001' => 'vvi', 'GSVIVG01037748001' => 'vvi', 'HanXRQChr05g0159621' => 'han', 'HanXRQChr05g0159631' => 'han', 'HanXRQChr05g0159641' => 'han', 'HanXRQChr05g0159651' => 'han', 'HanXRQChr05g0159661' => 'han', 'HanXRQChr05g0159671' => 'han', 'HanXRQChr05g0159681' => 'han', 'HanXRQChr12g0359521' => 'han', 'HanXRQChr15g0470121' => 'han', 'HanXRQChr16g0516621' => 'han', 'HanXRQChr16g0516631' => 'han', 'Haze_03123' => 'cav', 'Haze_03126' => 'cav', 'Haze_06919' => 'cav', 'Haze_06924' => 'cav', 'Haze_09191' => 'cav', 'Haze_09757' => 'cav', 'Haze_09758' => 'cav', 'Hma1.2p1_0298F.1_g117180' => 'hma', 'Hma1.2p1_0345F.1_g131310' => 'hma', 'HPP92_020933' => 'vpl', 'HPP92_020976' => 'vpl', 'Lalb_Chr03g0035661' => 'lal', 'Lalb_Chr03g0035671' => 'lal', 'Lalb_Chr03g0035681' => 'lal', 'Lalb_Chr15g0087981' => 'lal', 'Lalb_Chr20g0116161' => 'lal', 'Lalb_Chr20g0119221' => 'lal', 'Lalb_Chr20g0119231' => 'lal', 'Lalb_Chr20g0119241' => 'lal', 'Lalb_Chr20g0119251' => 'lal', 'Lj1C882T6' => 'lonja', 'Lj1P1239T23' => 'lonja', 'Lj1P1239T28' => 'lonja', 'Lj1P882T24' => 'lonja', 'Lj1P882T30' => 'lonja', 'Lj2P261T25' => 'lonja', 'Lj3g0022575' => 'lja', 'Lj4g0010169' => 'lja', 'Lj4g0015730' => 'lja', 'Lj5P352T36' => 'lonja', 'Lj5P353T11' => 'lonja', 'Lj5P354T11' => 'lonja', 'Lj6g0002476' => 'lja', 'Lj6g0013717' => 'lja', 'Lj6g0016582' => 'lja', 'Lj8A174T72' => 'lonja', 'Lj8C174T11' => 'lonja', 'Lj8P174T24' => 'lonja', 'LjContig00272g0025521' => 'lja', 'Lsat_1_v5_gn_4_118920' => 'lsa', 'Lsat_1_v5_gn_4_61981' => 'lsa', 'Lsat_1_v5_gn_4_62001' => 'lsa', 'Lsat_1_v5_gn_4_62200' => 'lsa', 'Lsat_1_v5_gn_4_62300' => 'lsa', 'Lsat_1_v5_gn_4_62400' => 'lsa', 'Lsat_1_v5_gn_5_2860' => 'lsa', 'Lsat_1_v5_gn_5_2901' => 'lsa', 'Lsat_1_v5_gn_5_74480' => 'lsa', 'Lsat_1_v5_gn_7_13601' => 'lsa', 'Lsat_1_v5_gn_7_13641' => 'lsa', 'Lsat_1_v5_gn_9_12041' => 'lsa', 'Lsat_1_v5_gn_9_90861' => 'lsa', 'Manes.03G134704' => 'mes', 'Manes.03G134706' => 'mes', 'Manes.03G134708' => 'mes', 'Manes.03G134712' => 'mes', 'Manes.03G134802' => 'mes', 'Manes.03G134804' => 'mes', 'Manes.03G134932' => 'mes', 'Manes.03G135000' => 'mes', 'Manes.03G135100' => 'mes', 'Manes.03G135200' => 'mes', 'Manes.07G059500' => 'mes', 'Manes.07G059533' => 'mes', 'Manes.07G059566' => 'mes', 'Manes.07G059600' => 'mes', 'Manes.10G134500' => 'mes', 'Manes.10G134600' => 'mes', 'Manes.12G127200' => 'mes', 'Mapoly0052s0056' => 'mpo', 'MBI16_g31722_MAGBIO' => 'mbi', 'MBI16_g31723_MAGBIO' => 'mbi', 'MBI16_g41932_MAGBIO' => 'mbi', 'MBI16_g41933_MAGBIO' => 'mbi', 'MCO14G043' => 'mco', 'MD02G1299400' => 'mdo', 'MD02G1299700' => 'mdo', 'MD02G1299800' => 'mdo', 'MD03G1191100' => 'mdo', 'MD03G1191200' => 'mdo', 'MD03G1191400' => 'mdo', 'MD05G1357600' => 'mdo', 'MD10G1331500' => 'mdo', 'MD10G1331600' => 'mdo', 'MD11G1208100' => 'mdo', 'Medtr0003s0500' => 'mtr', 'Medtr2g015220' => 'mtr', 'Medtr2g025710' => 'mtr', 'Medtr3g055380' => 'mtr', 'Medtr4g133015' => 'mtr', 'Medtr5g094140' => 'mtr', 'MELO3C013111.2' => 'cme', 'MELO3C013116.2' => 'cme', 'MELO3C013118.2' => 'cme', 'MELO3C013120.2' => 'cme', 'MELO3C024005.2' => 'cme', 'MELO3C024006.2' => 'cme', 'MELO3C024007.2' => 'cme', 'MELO3C024008.2' => 'cme', 'Migut.H01784' => 'egut', 'Migut.L00464' => 'egut', 'Migut.M01394' => 'egut', 'Migut.M01698' => 'egut', 'MSTRG.14614' => 'ama', 'MSTRG.7169' => 'ama', 'Nitab4.5_0000143g0230' => 'nta', 'Nitab4.5_0000143g0240' => 'nta', 'Nitab4.5_0001198g0020' => 'nta', 'Nitab4.5_0001198g0040' => 'nta', 'Nitab4.5_0005874g0060' => 'nta', 'Nitab4.5_0013812g0010' => 'nta', 'Nn1g00118' => 'nnu', 'Nn1g03313' => 'nnu', 'Nn1g03314' => 'nnu', 'Nn1g07379' => 'nnu', 'Nn1g07380' => 'nnu', 'Nn3g21599' => 'nnu', 'Nn6g33579' => 'nnu', 'Nn6g35658' => 'nnu', 'Oeu011388.1' => 'oeu', 'Oeu015701.1' => 'oeu', 'Oeu016822.1' => 'oeu', 'Oeu016826.1' => 'oeu', 'Oeu019630.1' => 'oeu', 'Oeu019632.1' => 'oeu', 'Oeu034541.1' => 'oeu', 'Oeu041967.2' => 'oeu', 'Oeu044424.1' => 'oeu', 'Os01g0651500' => 'osa', 'Os02g0454500' => 'osa', 'Os02g0454700' => 'osa', 'Os02g0468100' => 'osa', 'Os04g0277400' => 'osa', 'Os04g0481800' => 'osa', 'Os04g0481900' => 'osa', 'Os07g0540000' => 'osa', 'Peaxi162Scf00235g00819' => 'pax', 'Peaxi162Scf00235g00821' => 'pax', 'Peaxi162Scf00235g00840' => 'pax', 'Peaxi162Scf00352g00110' => 'pax', 'Peaxi162Scf00376g00017' => 'pax', 'Peaxi162Scf01509g00010' => 'pax', 'Peaxi162Scf01509g00012' => 'pax', 'PGR004G0891' => 'pgr', 'PGR004G1426' => 'pgr', 'PGR031G1090' => 'pgr', 'PGR031G1301' => 'pgr', 'PGR031G2947' => 'pgr', 'PGR031G2964' => 'pgr', 'PGR042G1024' => 'pgr', 'PGR042G2187' => 'pgr', 'PGR042G3926' => 'pgr', 'PGR083G1884' => 'pgr', 'PGSC0003DMG400013276' => 'stu', 'PGSC0003DMG400013277' => 'stu', 'PGSC0003DMG400013347' => 'stu', 'PGSC0003DMG400016503' => 'stu', 'PGSC0003DMG400022198' => 'stu', 'PGSC0003DMG400022199' => 'stu', 'PGSC0003DMG401013278' => 'stu', 'PGSC0003DMG402013278' => 'stu', 'Phvul.006G049500' => 'pvu', 'Phvul.006G049600' => 'pvu', 'Phvul.006G049700' => 'pvu', 'Phvul.006G143200' => 'pvu', 'Phvul.008G273300' => 'pvu', 'Phvul.011G013200' => 'pvu', 'Potri.001G106800' => 'ptr', 'Potri.001G260700' => 'ptr', 'Potri.006G009600' => 'ptr', 'Potri.006G009800' => 'ptr', 'Potri.008G145700' => 'ptr', 'Potri.009G054900' => 'ptr', 'Potri.009G055000' => 'ptr', 'Potri.009G055100' => 'ptr', 'Potri.016G014600' => 'ptr', 'Potri.016G014700' => 'ptr', 'Pp3c10_23080' => 'ppa', 'Pp3c12_20130' => 'ppa', 'Pp3c3_10310' => 'ppa', 'Prupe.2G024800' => 'ppe', 'Prupe.2G024900' => 'ppe', 'Prupe.4G010500' => 'ppe', 'Prupe.4G010600' => 'ppe', 'Prupe.4G010700' => 'ppe', 'Prupe.4G227200' => 'ppe', 'Prupe.4G227300' => 'ppe', 'Prupe.4G227400' => 'ppe', 'Psat0s3331g0040' => 'psa', 'Psat1g176320' => 'psa', 'Psat1g176360' => 'psa', 'Psat5g172720' => 'psa', 'PSO017G3743' => 'pso', 'PSO063G2023' => 'pso', 'PSO063G4212' => 'pso', 'PSO170G3233' => 'pso', 'PSO339G4094' => 'pso', 'PSO384G2122' => 'pso', 'PSO384G2335' => 'pso', 'PSO384G3303' => 'pso', 'PSO478G0024' => 'pso', 'PSO478G0879' => 'pso', 'PSO478G1431' => 'pso', 'PSO478G4116' => 'pso', 'PSO541G3227' => 'pso', 'PSO724G0114' => 'pso', 'PSO729G0046' => 'pso', 'PSO782G1272' => 'pso', 'PSO782G4592' => 'pso', 'PSO801G0045' => 'pso', 'PSO801G0682' => 'pso', 'PSO832G3274' => 'pso', 'QL02p033861' => 'qlo', 'QL04p010527' => 'qlo', 'QL05p069720' => 'qlo', 'QL05p069733' => 'qlo', 'QL06p010985' => 'qlo', 'QL08p008119' => 'qlo', 'QL08p008124' => 'qlo', 'QL08p008151' => 'qlo', 'QL11p036470' => 'qlo', 'RcHm_v2.0_Chr1g0318541' => 'rch', 'RcHm_v2.0_Chr1g0318551' => 'rch', 'RcHm_v2.0_Chr2g0123061' => 'rch', 'RcHm_v2.0_Chr2g0123071' => 'rch', 'RcHm_v2.0_Chr2g0123131' => 'rch', 'RcHm_v2.0_Chr2g0161741' => 'rch', 'RcHm_v2.0_Chr3g0485321' => 'rch', 'RcHm_v2.0_Chr5g0001521' => 'rch', 'RcHm_v2.0_Chr5g0001531' => 'rch', 'RcHm_v2.0_Chr6g0266191' => 'rch', 'RcHm_v2.0_Chr6g0266201' => 'rch', 'RcHm_v2.0_Chr6g0266251' => 'rch', 'RcHm_v2.0_Chr6g0266341' => 'rch', 'RcHm_v2.0_Chr6g0266351' => 'rch', 'Rhsim02G0096900' => 'rsi', 'Rhsim02G0097000' => 'rsi', 'Rhsim02G0097100' => 'rsi', 'Rhsim02G0097400' => 'rsi', 'Rhsim02G0097500' => 'rsi', 'Rhsim02G0097800' => 'rsi', 'Rhsim02G0097900' => 'rsi', 'Rhsim02G0098300' => 'rsi', 'Rhsim02G0098400' => 'rsi', 'Rhsim02G0098500' => 'rsi', 'Rhsim02G0100500' => 'rsi', 'Rhsim02G0210100' => 'rsi', 'Rhsim06G0224500' => 'rsi', 'Rhsim06G0224700' => 'rsi', 'Rhsim06G0224800' => 'rsi', 'Rhsim13G0145700' => 'rsi', 'Rhsim13G0145800' => 'rsi', 'Rhsim13G0145900' => 'rsi', 'RhsimUnG0109900' => 'rsi', 'RhsimUnG0110000' => 'rsi', 'RhsimUnG0110100' => 'rsi', 'RhsimUnG0227100' => 'rsi', 'Sabra01G0080800' => 'sbr', 'Sabra06G0007400' => 'sbr', 'Sabra06G0007500' => 'sbr', 'Sabra06G0007600' => 'sbr', 'Sabra06G0008000' => 'sbr', 'Sabra06G0008100' => 'sbr', 'Sabra08G0110700' => 'sbr', 'Sabra09G0040200' => 'sbr', 'Sabra09G0040300' => 'sbr', 'Sabra16G0001200' => 'sbr', 'Sabra16G0001300' => 'sbr', 'Sabra16G0016600' => 'sbr', 'Sabra16G0016700' => 'sbr', 'SalBow1G0333' => 'sbo', 'SalBow1G0757' => 'sbo', 'SalBow8G0446' => 'sbo', 'SalBow8G1158' => 'sbo', 'SalBow8G3257' => 'sbo', 'SalBow8G5404' => 'sbo', 'Sc03g0008190' => 'sci', 'Sc13g0002650' => 'sci', 'Sc16g0005340' => 'sci', 'Sc17g0007730' => 'sci', 'Sed0002002' => 'sed', 'Sed0002964' => 'sed', 'Sed0006966' => 'sed', 'Sed0009386' => 'sed', 'Sed0009447' => 'sed', 'Sed0010225' => 'sed', 'Sed0011044' => 'sed', 'Sed0020248' => 'sed', 'Sed0024473' => 'sed', 'SEGI_00414' => 'sgi', 'SEGI_36025' => 'sgi', 'SGA_v2.0_scaffold171G38905' => 'sas', 'SGA_v2.0_scaffold7G03760' => 'sas', 'SMO011G0031' => 'smo', 'Solyc06g066630.1' => 'sly', 'Solyc07g065060.1' => 'sly', 'Solyc07g065070.2' => 'sly', 'Solyc11g012200.3' => 'sly', 'Solyc11g012210.1' => 'sly', 'Solyc11g012220.1' => 'sly', 'Solyc11g012230.3' => 'sly', 'Solyc11g012240.1' => 'sly', 'Solyc11g012250.1' => 'sly', 'Solyc11g012260.3' => 'sly', 'Solyc12g089050.3' => 'sly', 'Sopen06g024900' => 'spe', 'Sopen07g033270' => 'spe', 'Sopen07g033280' => 'spe', 'Sopen11g007000' => 'spe', 'Sopen11g007010' => 'spe', 'Sopen11g007020' => 'spe', 'Sopen11g007030' => 'spe', 'Sp5g10300' => 'spa', 'Sp6g08930' => 'spa', 'Sp6g17260' => 'spa', 'Sp6g17270' => 'spa', 'Sp6g17280' => 'spa', 'Sp6g17290' => 'spa', 'Sp6g17300' => 'spa', 'Sp7g21710' => 'spa', 'Sp7g21720' => 'spa', 'TAR624G1134' => 'tar', 'TAR626G1213' => 'tar', 'TAR627G0027' => 'tar', 'TAR627G0292' => 'tar', 'TAR627G0305' => 'tar', 'TAR627G0513' => 'tar', 'TAR627G0517' => 'tar', 'TAR627G0799' => 'tar', 'TAR627G1149' => 'tar', 'TAR629G1023' => 'tar', 'TAR629G1305' => 'tar', 'TAR629G3240' => 'tar', 'THA.LOC104813436' => 'tha', 'THA.LOC104817572' => 'tha', 'THA.LOC104818106' => 'tha', 'Thecc.01G403700' => 'tca', 'Thecc.01G403800' => 'tca', 'Thecc.04G012800' => 'tca', 'Thecc.04G013100' => 'tca', 'Thecc.04G013300' => 'tca', 'Thecc.06G233100' => 'tca', 'Thecc.06G233200' => 'tca', 'Thecc.06G233300' => 'tca', 'Thecc.07G024500' => 'tca', 'Thecc.07G024600' => 'tca', 'Thecc.07G025300' => 'tca', 'Thecc.07G025400' => 'tca', 'Thecc.07G025500' => 'tca', 'Thecc.07G025600' => 'tca', 'Thecc.07G159500' => 'tca', 'Thhalv10005628m.g' => 'esa', 'Thhalv10006422m.g' => 'esa', 'Thhalv10010933m.g' => 'esa', 'Thhalv10013992m.g' => 'esa', 'Thhalv10014033m.g' => 'esa', 'Thhalv10015320m.g' => 'esa', 'Thhalv10015572m.g' => 'esa', 'Thhalv10015807m.g' => 'esa', 'Thhalv10015854m.g' => 'esa', 'TPR.G13176' => 'tpr', 'TPR.G14840' => 'tpr', 'TPR.G18337' => 'tpr', 'TPR.G23576' => 'tpr', 'TPR.G24934' => 'tpr', 'TPR.G24955' => 'tpr', 'TPR.G37113' => 'tpr', 'TPR.G6138' => 'tpr', 'TPR.G8240' => 'tpr', 'TWI09G0998' => 'twi', 'TWI15G0107' => 'twi', 'TWI38G0462' => 'twi', 'TWI38G0820' => 'twi', 'TWI38G0854' => 'twi', 'TWI38G1505' => 'twi', 'TWI38G1644' => 'twi', 'TWI38G2406' => 'twi', 'TWI39G1136' => 'twi', 'TWI39G1141' => 'twi', 'TWI39G1250' => 'twi', 'TWI53G1605' => 'twi', 'TWI63G1585' => 'twi', 'TWI73G1163' => 'twi', 'unitig_748.g7919' => 'ugi', 'unitig_748.g7920' => 'ugi', 'unitig_8.g4788' => 'ugi', 'unitig_8.g4789' => 'ugi', 'unitig_899.g15280' => 'ugi', 'vmacro03642' => 'vma', 'vmacro11578' => 'vma', 'vmacro15756' => 'vma', 'vmacro15757' => 'vma', 'vmacro15758' => 'vma', 'VMungo0540G1736' => 'vmu', 'VMungo0540G1927' => 'vmu', 'VMungo0540G1928' => 'vmu', 'VMungo0647G2064' => 'vmu', 'VMungo1127G1201' => 'vmu', 'Zm00001eb086830' => 'zma', 'Zm00001eb158240' => 'zma', 'Zm00001eb403760' => 'zma', 'Zm00001eb425060' => 'zma' ) $gf_id = 'HOM05D000701' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000701' ) $data_identifier = 'HOM05D000701' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 15, 'aag' => (int) 1, 'ach' => (int) 4, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 19, 'arhy' => (int) 6, 'ath' => (int) 12, 'atr' => (int) 1, 'acertr' => (int) 17, 'cqu' => (int) 9, 'bca' => (int) 33, 'bol' => (int) 17, 'bra' => (int) 14, 'can' => (int) 7, 'cansat' => (int) 9, 'chi' => (int) 11, 'cru' => (int) 10, 'car' => (int) 2, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 1, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 8, 'csa' => (int) 10, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 3, 'bvu' => (int) 2, 'egr' => (int) 19, 'fan' => (int) 19, 'fve' => (int) 9, 'gma' => (int) 12, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 11, 'cav' => (int) 7, 'hma' => (int) 2, 'vpl' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 12, 'lja' => (int) 7, 'lsa' => (int) 13, 'mes' => (int) 17, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 4, 'ama' => (int) 2, 'nta' => (int) 6, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 8, 'pax' => (int) 7, 'pgr' => (int) 10, 'stu' => (int) 8, 'pvu' => (int) 6, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 8, 'psa' => (int) 4, 'pso' => (int) 20, 'qlo' => (int) 9, 'rch' => (int) 14, 'rsi' => (int) 22, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 2, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 12, 'tha' => (int) 3, 'tca' => (int) 15, 'esa' => (int) 9, 'tpr' => (int) 9, 'twi' => (int) 14, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425060' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1